Index A | B | C | D | E | F | G | I | L | M | P | R | S | U | V A add_constraints() (in module BFAIR.mfa.sampling) add_experimental_parameters() (BFAIR.mfa.INCA.INCA_script method) add_feasible_constraints() (in module BFAIR.mfa.sampling) add_reaction_parameters() (BFAIR.mfa.INCA.INCA_script method) add_reactions_to_script() (BFAIR.mfa.INCA.INCA_script method) B BFAIR.parsers.data_import_parsers module bound_relaxation() (in module BFAIR.mfa.sampling) C calculate_split_ratio() (in module BFAIR.mfa.utils) cobra_add_split_rxns() (in module BFAIR.mfa.sampling) combine_split_rxns() (in module BFAIR.mfa.sampling) D data_extraction() (BFAIR.mfa.INCA.INCA_reimport.INCA_reimport method) det_simulation_type() (BFAIR.mfa.INCA.INCA_reimport.INCA_reimport method) E extract_base_stats() (BFAIR.mfa.INCA.INCA_reimport.INCA_reimport method) extract_file_info() (BFAIR.mfa.INCA.INCA_reimport.INCA_reimport method) extract_model_info() (BFAIR.mfa.INCA.INCA_reimport.INCA_reimport method) extract_sim_params() (BFAIR.mfa.INCA.INCA_reimport.INCA_reimport method) F find_biomass_reaction() (in module BFAIR.mfa.sampling) find_reverse_rxns() (in module BFAIR.mfa.sampling) G get_fit_info() (BFAIR.mfa.INCA.INCA_reimport.INCA_reimport method) get_fitted_parameters() (BFAIR.mfa.INCA.INCA_reimport.INCA_reimport method) get_flux_precision() (in module BFAIR.mfa.utils) get_min_solution_val() (in module BFAIR.mfa.sampling) get_observable_fluxes() (in module BFAIR.mfa.utils) get_residuals_info() (BFAIR.mfa.INCA.INCA_reimport.INCA_reimport method) get_subsytem_reactions() (in module BFAIR.mfa.visualization) I initialize_model() (BFAIR.mfa.INCA.INCA_script method) initiate_MATLAB_script() (BFAIR.mfa.INCA.INCA_script method) L limit_to_one_experiment() (BFAIR.mfa.INCA.INCA_script method) limit_to_one_model() (BFAIR.mfa.INCA.INCA_script method) M mapping() (BFAIR.mfa.INCA.INCA_script method) model_rxn_overlap() (in module BFAIR.mfa.sampling) module BFAIR.parsers.data_import_parsers P parse_cobra_model() (in module BFAIR.mfa.INCA) percent_observable_fluxes() (in module BFAIR.mfa.utils) plot_all_subsystem_fluxes() (in module BFAIR.mfa.visualization) plot_sampled_reaction_fluxes() (in module BFAIR.mfa.visualization) plot_split_ratio() (in module BFAIR.mfa.utils) plot_subsystem_fluxes() (in module BFAIR.mfa.visualization) R reimport() (BFAIR.mfa.INCA.INCA_reimport.INCA_reimport method) reimport_descr (in module BFAIR.mfa.INCA.INCA_reimport) replace_biomass_rxn_name() (in module BFAIR.mfa.sampling) reshape_fluxes_escher() (in module BFAIR.mfa.visualization) run_INCA_in_MATLAB() (BFAIR.mfa.INCA.INCA_script method) runner_script_generator() (BFAIR.mfa.INCA.INCA_script method) rxn_coverage() (in module BFAIR.mfa.sampling) S sampled_fluxes_minrange() (in module BFAIR.mfa.visualization) save_INCA_script() (BFAIR.mfa.INCA.INCA_script method) save_runner_script() (BFAIR.mfa.INCA.INCA_script method) script_generator() (BFAIR.mfa.INCA.INCA_script method) script_generator_descr (in module BFAIR.mfa.INCA.INCA_script_generator) show_reactions() (in module BFAIR.mfa.visualization) show_subsystems() (in module BFAIR.mfa.visualization) sort_fit_info() (BFAIR.mfa.INCA.INCA_reimport.INCA_reimport method) sort_parameter_info() (BFAIR.mfa.INCA.INCA_reimport.INCA_reimport method) sort_residual_info() (BFAIR.mfa.INCA.INCA_reimport.INCA_reimport method) split_lumped_reverse_rxns() (in module BFAIR.mfa.sampling) split_lumped_rxns() (in module BFAIR.mfa.sampling) symmetrical_metabolites() (BFAIR.mfa.INCA.INCA_script method) U unbalanced_reactions() (BFAIR.mfa.INCA.INCA_script method) V verify_and_estimate() (BFAIR.mfa.INCA.INCA_script method)