BFAIR.mfa.visualization.get_subsytem_reactions

BFAIR.mfa.visualization.get_subsytem_reactions(model, subsystem_id)

Extracts the names of the reactions in a selected subsytem. Also outputs a list of all the subsytems in the model.

Parameters

modelcobra.Model

Metabolic model.

subsystem_idint

ID of the subsystem the reactions should be extracted from. Can be selected after inspection using show_subsystems().

Returns

reactionslist

List of reactions in a selected subsytem.

subsystemslist

List of subsystems in a model. Input for plot_subsystem_fluxes().