Example NotebooksΒΆ
- Introduction
- Cobra model parser
- MFA using INCA in MATLAB - now all in Python!
- Reimport MFA data after calculation in INCA
- INCA re-import
- MFA data as constraints for a COBRA model
- Pathway visualization
- A full MFA analysis workflow
- INCA script generation
- Initialize the script
- Import the data
- Exclude data for irreleavnt experiments and models
- Provide the path to you INCA installation, your working directory and the name of the previously generated MATLAB script
- INCA will be started and your script run in MATLAB. This will produce the .mat file specified above
- Reimport MFA data after calculation in INCA
- Model compatibility
- Sampling
- Pathway visualization