BFAIR.parsers.data_import_parsers

INCA reaction input parser. Methods to prepare reaction input data to fit the BFAIR INCA tools format.

Functions

atomMapping_reactions2_file_parser(…[, …])	Parses a file containing reaction data into a pandas dataframe containing the carbon atom mapping data, only considering compounds with carbon
atom_mapping_metabolites_file_parser(…[, …])	Parses a file containing metabolite data into a pandas dataframe containing every meatbolite that contains carbon including the metabolites atom positions.
modelReactions_file_parser(file_path, model_id)	Parses a file containing reaction data into a pandas dataframe
reaction_parser(equation_string)	Parses a string representing a reaction into the form of (reactant_list, product_list, reversible)