BFAIR.mfa.visualization.plot_subsystem_fluxes

BFAIR.mfa.visualization.plot_subsystem_fluxes(model, sampled_fluxes, subsystem_id, no_zero_cols=False)

Visualizes the distribution of sampled fluxes in a selected subsytem.

Parameters

modelcobra.Model

Metabolic model.

sampled_fluxespandas.Dataframe

The calculated fluxes, output of sampling. For each reaction, n fluxes will be calculated (n = number of samples taken).

subsystem_idint

ID of the subsystem the reactions should be extracted from. Can be selected after inspection using show_subsystems().

no_zero_colsboolean

Indicates if columns containing only 0s should be excluded.

Returns

figmatplotlib.AxesSubplot

Figure of sampled value distribution for one reaction.